Datasets
Human renal cortex
Biopsy tissue 1
This a small four channel confocal 3D volume. The four fluorescence channels are, in order, DAPI, Phalloidin-A488, AQP2 and AQP1. The volume contains a crosssection of a glomerulus, vessels and a field of proximal tubules, putative distal convoluted tubules and collecting duct.
Image file
| Filename | Kidney_Cortex_Human.tif |
| Size | 84.1 MB |
| Modality | Confocal |
| Dimensions (pixels) | 512x512x40 |
| Dimensions (microns) | 635.9x635.9x40 |
| Channels | 4 |
| Reference | Woloshuk et al, Winfree et al |
VTEA files
| Use | Filename |
|---|---|
| Objects | XXXXXX.obx |
| Image | XXXXX.tif |
| Image processing | XXXXX.prc |
| Documentation | XXXX.txt |
| Reference | Winfree et al |
Biopsy tissue 2
This is an image volume of a kidney biopsy collected with a cyclic multiplexed immunofluorescense approach, CODEX.
Image file
| Filename | Kidney_Cortex_Human_CODEX.tif |
| Size | 2.3 GB |
| Modality | Widefield/CODEX |
| Dimensions (pixels) | 6592x3760x1 |
| Dimensions (microns) | 2490x1420 |
| Channels | 44 |
| Reference | Winfree et al |
VTEA files
| Use | Filename |
|---|---|
| Objects | XXXXXX.obx |
| Image | XXXXX.tif |
| Image processing | XXXXX.prc |
| Documentation | XXXX.txt |
| Reference | Winfree et al |
Nephrectomy tissue 1
This a large four channel confocal 3D volume orginally used to extract labeled nuclei in this publication. The four fluorescence channels are, in order, DAPI, XXXX, YYYY and ZZZZ. The volume contains a broad crosssection of the cortex and outer medulla with glomeruli, vessels, tubules and immune cells.
Image file
| Filename | Human_Kidney_Cortex_Mesoscale.tif |
| Size | 14.4 GB |
| Modality | Confocal |
| Dimensions (pixels) | |
| Dimensions (microns) | |
| Channels | 4 |
| Reference | Woloshuk et al, Winfree et al |
VTEA files
| Use | Filename |
|---|---|
| Objects | XXXXXX.obx |
| Image | XXXXX.tif |
| Image processing | XXXXX.prc |
| Documentation | XXXX.txt |
| Reference | Winfree et al |
Nephrectomy tissue 2
This nephrectomy tissue was stained and imaged using a protocol developed for the Kidney Precision Medicine Project and published here. The eight fluorescence channels are, in order, Phalloidin-A488, THP, AQP1, MPO, CD68, CD3, Siglec-8, and DAPI.
Image file
| Filename | Kidney_Cortex_Human_Spectral_1.tif |
| Size | 1.8 GB |
| Modality | Confocal |
| Dimensions (pixels) | 1704x3534x19 |
| Dimensions (microns) | 921x1911x19 |
| Channels | 8 |
| Reference | Woloshuk et al, Winfree et al |
VTEA files
| Use | Filename |
|---|---|
| Objects | XXXXXX.obx |
| Image | XXXXX.tif |
| Image processing | XXXXX.prc |
| Documentation | XXXX.txt |
| Reference | Winfree et al |